| Tool name | GeneSeqer |
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| URL | http://deepc2.psi.iastate.edu/cgi-bin/gs.cgi |
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| Important features | Identify potential exon/intron structure in pre-mRNA by splice site prediction and spliced alignment. |
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| Citations | Brendel V, Xing L, Zhu W. Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus. Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5. PubMed PMID: 14764557. |
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| Year of publication | 2004 |
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| Rank by usage frequency | 100 |
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| Comments | 1) Looks for the EST matches. 2) E-mail notification. 3) Specialized GeneSeqer server at PlantGDB is used to align plant sequences. |
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| Function | Species, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse, Finds alternative splicing in chicken, Finds alternative splicing in Drosophila, Finds alternative splicing in other species |
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| Category | |
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| Input file format | Genomic DNA sequence and cDNA/EST sequences in FASTA format |
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| Output file format | |
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| Limitation | |
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